The global virome (is a network)

There are many hosts, and many, many more viruses. This creates a lot of interesting research questions about the integration of data, the prediction of interactions from very sparse information, and the transformation of these predictions into action.

NCBITaxonomy.jl - Rapid Biological Names Finding and Reconciliation
2021 Google Scholar
T. Poisot R. Gibb S.J. Ryan C.J. Carlson
Ongoing Worldwide Homogenization of Human Pathogens
2014 Text (via DOI)
T. Poisot C. Nunn S. Morand
Data Proliferation, Reconciliation, and Synthesis in Viral Ecology
2021 Text (via DOI)
R. Gibb G.F. Albery D.J. Becker L. Brierley R. Connor T.A. Dallas E.A. Eskew M.J. Farrell A.L. Rasmussen S.J. Ryan A. Sweeny C.J. Carlson T. Poisot
The Science of the Host-Virus Network
2021 Text (via DOI)
G.F. Albery D.J. Becker L. Brierley C.E. Brook R.C. Christofferson L.E. Cohen T.A. Dallas E.A. Eskew A. Fagre M.J. Farrell E. Glennon S. Guth M.B. Joseph N. Mollentze B.A. Neely T. Poisot A.L. Rasmussen S.J. Ryan S. Seifert A.R. Sjodin E.M. Sorrell C.J. Carlson
The Global Virome in One Network (VIRION): An Atlas of Vertebrate-Virus Associations
2022 Text (via DOI)
C.J. Carlson R.J. Gibb G.F. Albery L. Brierley R.P. Connor T.A. Dallas E.A. Eskew A.C. Fagre M.J. Farrell H.K. Frank R.L. Muylaert T. Poisot A.L. Rasmussen S.J. Ryan S.N. Seifert
Network Embedding Unveils the Hidden Interactions in the Mammalian Virome
2023 Text (via DOI)
T. Poisot M.A. Ouellet N. Mollentze M.J. Farrell D.J. Becker L. Brierley G.F. Albery R.J. Gibb S.N. Seifert C.J. Carlson
A Minimum Data Standard for Wildlife Disease Studies
2024 Text (via DOI)
T. Stevens R. Zimmerman G. Albery D. Becker R. Kading C. Keiser S. Khandelwal S. Kramer-Schadt R. Krut-Landau C. McKee D. Montecino-Latorre Z. O’Donoghue S. Olson T. Poisot H. Robertson S. Ryan S. Seifert D. Simons A. Vicente-Santos C. Wood E. Graeden C. Carlson