thepoisotlab

computational ecology

Ecogeographical Rules and the Macroecology of Food Webs
Baiser, B. Gravel, D. Cirtwill, A. R. Dunne, J. A. Fahimipour, A. K. Gilarranz, L. J. Grochow, J. A. Li, D. Martinez, N. D. McGrew, A. Poisot, T. Romanuk, T. N. Stouffer, D. B. Trotta, L. B. Valdovinos, F. S. Williams, R. J. Wood, S. A. Yeakel, J. D.
Functional Diversity: An Epistemic Roadmap
Malaterre, C. Dussault, A. C. Rousseau-Mermans, S. Barker, G. Beisner, B. E. Bouchard, F. Desjardins, E. Handa, I. T. Kembel, S. W. Lajoie, G. Maris, V. Munson, A. D. Odenbaugh, J. Poisot, T. Shapiro, B. J. Suttle, C. A.
EcologicalNetworks.jl - Analysing Ecological Networks
Poisot, T. Belisle, Z. Hoebeke, L. Stock, M. Szefer, P.
[Re] Insect Natural Enemies as Regulating Factors
Caron, D. Lessard, V. Wu, Q. Poisot, T.
Ecological Data Should Not Be So Hard to Find and Reuse
Poisot, T. Bruneau, A. Gonzalez, A. Gravel, D. Peres-Neto, P.
Data-Based, Synthesis-Driven: Setting the Agenda for Computational Ecology
Poisot, T. LaBrie, R. Larson, E. Rahlin, A. Simmons, B. I.
The Marine Fish Food Web Is Globally Connected
Albouy, C. Archambault, P. Appeltans, W. Araújo, M. B. Beauchesne, D. Cazelles, K. Cirtwill, A. R. Fortin, M.J. Galiana, N. Leroux, S. J. Pellissier, L. Poisot, T. Stouffer, D. B. Wood, S. A. Gravel, D.
Revealing Biases in the Sampling of Ecological Interaction Networks
Aguiar, M. A. Newman, E. A. Pires, M. M. Yeakel, J. D. Boettiger, C. Burkle, L. A. Gravel, D. Guimarães, P. R. O’Donnell, J. L. Poisot, T. Fortin, M.J. Hembry, D. H.
Homogenization of Species Composition and Species Association Networks Are Decoupled
Li, D. Poisot, T. Waller, D. M. Baiser, B.
Inferring Predator-Prey Interactions in Food Webs
Pomeranz, J. P. Thompson, R. M. Poisot, T. Harding, J. S.
Complex Ecological Networks
Besson, M. Delmas, E. Poisot, T. Gravel, D.
Interactions Retain the Co-Phylogenetic Matching That Communities Lost
Poisot, T. Stouffer, D. B.
Leveraging Pathogen Community Distributions to Understand Outbreak and Emergence Potential
Dallas, T. A. Carlson, C. J. Poisot, T.
Management, Archiving, and Sharing for Biologists and the Role of Research Institutions in the Technology-Oriented Age
Renaut, S. Budden, A. E. Gravel, D. Poisot, T. Peres-Neto, P.
Analysing Ecological Networks of Species Interactions
Delmas, E. Besson, M. Brice, M.H. Burkle, L. A. Dalla Riva, G. V. Fortin, M.J. Gravel, D. Guimarães, P. R. Hembry, D. H. Newman, E. A. Olesen, J. M. Pires, M. M. Yeakel, J. D. Poisot, T.
Identifying a Common Backbone of Interactions Underlying Food Webs From Different Ecosystems
Mora, B. B. Gravel, D. Gilarranz, L. J. Poisot, T. Stouffer, D. B.
[Re] on the Coexistence of Specialists and Generalists
Poisot, T.
Bringing Elton and Grinnell Together: A Quantitative Framework to Represent the Biogeography of Ecological Interaction Networks
Gravel, D. Baiser, B. Dunne, J. A. Kopelke, J.P. Martinez, N. D. Nyman, T. Poisot, T. Stouffer, D. B. Tylianakis, J. M. Wood, S. A. Roslin, T.
Ecological Interactions and the Netflix Problem
Desjardins-Proulx, P. Laigle, I. Poisot, T. Gravel, D.
Making Scientific Content More Accessible
Goring, S. Whitney, K. S. Bruna, E. M. Jacob, A. L. Poisot, T.
Wind Drives Microbial Eukaryote Communities in a Temperate Closed Lagoon
Péquin, B. Mohit, V. Poisot, T. Tremblay, R. Lovejoy, C.
Hosts, Parasites and Their Interactions Respond to Different Climatic Variables
Poisot, T. Gueveneux-Julien, C. Fortin, M.J. Gravel, D. Legendre, P.
Network Structure and Local Adaptation in Coevolving Bacteria-Phage Interactions
Gurney, J. Aldakak, L. Betts, A. Gougat-Barbera, C. Poisot, T. Kaltz, O. Hochberg, M. E.
Simulations of Biomass Dynamics in Community Food Webs
Delmas, E. Brose, U. Gravel, D. Stouffer, D. B. Poisot, T.
Linear Filtering Reveals False Negatives in Species Interaction Data
Stock, M. Poisot, T. Waegeman, W. Baets, B. D.
Paco: Implementing Procrustean Approach to Cophylogeny in R
Hutchinson, M. C. Cagua, E. F. Balbuena, J. A. Stouffer, D. B. Poisot, T.
Using Peer Review to Support Development of Community Resources for Research Data Management
Soyka, H. Budden, A. Hutchison, V. Bloom, D. Duckles, J. Hodge, A. Mayernik, M. Poisot, T. Rauch, S. Steinhart, G. Wasser, L. Whitmire, A. Wright, S.
Scientific Theories and Artificial Intelligence
Desjardins-Proulx, P. Poisot, T. Gravel, D.
Compositional Turnover in Host and Parasite Communities Does Not Change Network Structure
Dallas, T. Poisot, T.
Sustainable Computational Science: The ReScience Initiative
Rougier, N. P. Hinsen, K. Alexandre, F. Arildsen, T. Barba, L. A. Benureau, F. C. Y. Brown, C. T. Buyl, P. Caglayan, O. Davison, A. P. Delsuc, M.A. Detorakis, G. Diem, A. K. Drix, D. Enel, P. Girard, B. Guest, O. Hall, M. G. Henriques, R. N. Hinaut, X. Jaron, K. S. Khamassi, M. Klein, A. Manninen, T. Marchesi, P. McGlinn, D. Metzner, C. Petchey, O. Plesser, H. E. Poisot, T. Ram, K. Ram, Y. Roesch, E. Rossant, C. Rostami, V. Shifman, A. Stachelek, J. Stimberg, M. Stollmeier, F. Vaggi, F. Viejo, G. Vitay, J. Vostinar, A. E. Yurchak, R. Zito, T.
BiMAT: A MATLAB Package to Facilitate the Analysis and Visualization of Bipartite Networks
Flores, C. O. Poisot, T. Valverde, S. Weitz, J. S.
How Ecological Networks Evolve
Poisot, T. Stouffer, D.
The Structure of Probabilistic Networks
Poisot, T. Cirtwill, A. R. Cazelles, K. Gravel, D. Fortin, M.J. Stouffer, D. B.
Mangal - Making Ecological Network Analysis Simple
Poisot, T. Baiser, B. Dunne, J. A. Kéfi, S. Massol, F. Mouquet, N. Romanuk, T. N. Stouffer, D. B. Wood, S. A. Gravel, D.
Synthetic Datasets and Community Tools for the Rapid Testing of Ecological Hypotheses
Poisot, T. Gravel, D. Leroux, S. Wood, S. A. Fortin, M.J. Baiser, B. Cirtwill, A. R. Araújo, M. B. Stouffer, D. B.
Ten Simple Rules for Digital Data Storage
Hart, E. M. Barmby, P. LeBauer, D. Michonneau, F. Mount, S. Mulrooney, P. Poisot, T. Woo, K. H. Zimmerman, N. B. Hollister, J. W.
Describe, Understand and Predict: Why Do We Need Networks in Ecology?
Poisot, T. Stouffer, D. B. Kéfi, S.
Temperature and Trophic Structure Are Driving Microbial Productivity Along a Biogeographical Gradient
Gray, S. M. Poisot, T. Harvey, E. Mouquet, N. Miller, T. E. Gravel, D.
The Spread of a Novel Behavior in Wild Chimpanzees: New Insights Into the Ape Cultural Mind
Gruber, T. Poisot, T. Zuberbühler, K. Hoppitt, W. Hobaiter, C.
Connecting People and Ideas From Around the World: Global Innovation Platforms for Next-Generation Ecology and Beyond
Jørgensen, P. S. Barraquand, F. Bonhomme, V. Curran, T. J. Cieraad, E. Ezard, T. G. Gherardi, L. A. Hayes, R. A. Poisot, T. Salguero-Gómez, R. , .
Bacteriophage Richness Reduces Bacterial Niche Overlap in Experimental Microcosms
Matias, M. G. Gravel, D. Combe, M. Poisot, T. Barbera, C. Lounnas, M. Bouvier, T. Mouquet, N.
When Is Co-Phylogeny Evidence of Coevolution?
Poisot, T.
A Continuum of Specialists and Generalists in Empirical Communities
Poisot, T. Kéfi, S. Morand, S. Stanko, M. Marquet, P. A. Hochberg, M. E.
Beyond Species: Why Ecological Interaction Networks Vary Through Space and Time
Poisot, T. Stouffer, D. B. Gravel, D.
Evolutionary Ecology of Specialisation
Vamosi, J. C. Poisot, T.
The Next Generation of Action Ecology: Novel Approaches Towards Global Ecological Research
White, R. L. Sutton, A. E. Salguero-Gómez, R. Bray, T. C. Campbell, H. Cieraad, E. Geekiyanage, N. Gherardi, L. Hughes, A. C. Jørgensen, P. S. Poisot, T. DeSoto, L. Zimmerman, N.
Best Publishing Practices to Improve User Confidence in Scientific Software
Poisot, T.
Lack of Quantitative Training Among Early-Career Ecologists: A Survey of the Problem and Potential Solutions
Barraquand, F. Ezard, T. H. G. Jørgensen, P. S. Zimmerman, N. Chamberlain, S. Salguero-Gómez, R. Curran, T. J. Poisot, T.
Using Neutral Theory to Reveal the Contribution of Meta-Community Processes to Assembly in Complex Landscapes
Gravel, D. Poisot, T. Desjardins-Proulx, P.
Ongoing Worldwide Homogenization of Human Pathogens
Poisot, T. Nunn, C. Morand, S.
When Is an Ecological Network Complex? Connectance Drives Degree Distribution and Emerging Network Properties
Poisot, T. Gravel, D.
Social Network Analysis Shows Direct Evidence for Social Transmission of Tool Use in Wild Chimpanzees
Hobaiter, C. Poisot, T. Zuberbühler, K. Hoppitt, W. Gruber, T.
Dispersal and Spatial Heterogeneity Allow Coexistence Between Enemies and Protective Mutualists
Poisot, T. Bever, J. D. Thrall, P. H. Hochberg, M. E.
The Case for Open Preprints in Biology
Desjardins-Proulx, P. White, E. P. Adamson, J. J. Ram, K. Poisot, T. Gravel, D.
The Structure of Natural Microbial Enemy-Victim Networks
Poisot, T. Lounnas, M. Hochberg, M. E.
Moving Toward a Sustainable Ecological Science: Don't Let Data Go to Waste!
Poisot, T. Mounce, R. Gravel, D.
Trophic Complementarity Drives the Biodiversity-Ecosystem Functioning Relationship in Food Webs
Poisot, T. Mouquet, N. Gravel, D.
Phage–bacteria Infection Networks
Weitz, J. S. Poisot, T. Meyer, J. R. Flores, C. O. Valverde, S. Sullivan, M. B. Hochberg, M. E.
High-Throughput Sequencing: A Roadmap Toward Community Ecology
Poisot, T. Péquin, B. Gravel, D.
Facultative and Obligate Parasite Communities Exhibit Different Network Properties
Poisot, T. Stanko, M. Miklisová, D. Morand, S.
Inferring Food Web Structure From Predator-Prey Body Size Relationships
Gravel, D. Poisot, T. Albouy, C. Velez, L. Mouillot, D.
An a Posteriori Measure of Network Modularity
Poisot, T.
A Simple Model to Study Phylogeographies and Speciation Patterns in Space
Desjardins-Proulx, P. Rosindell, J. L. Poisot, T. Gravel, D.
Terminal Investment Induced by a Bacteriophage in a Rhizosphere Bacterium
Poisot, T. Bell, T. Martinez, E. Gougat-Barbera, C. Hochberg, M. E.
A Comparative Study of Ecological Specialization Estimators
Poisot, T. Canard, E. Mouquet, N. Hochberg, M. E.
The Dissimilarity of Species Interaction Networks
Poisot, T. Canard, E. Mouillot, D. Mouquet, N. Gravel, D.
A Global Network of Next Generation Ecologists
Jorgensen, P. S. Bonhomme, V. Ezard, T. H. Hayes, R. A. Poisot, T. Salguero-Gomez, R. Vizzini, S. Zimmerman, N.
The Digitize Package: Extracting Numerical Data From Scatterplots
Poisot, T.
A Conceptual Framework for the Evolution of Ecological Specialisation
Poisot, T. Bever, J. D. Nemri, A. Thrall, P. H. Hochberg, M. E.
Trophic Network Structure Emerges Through Antagonistic Coevolution in Temporally Varying Environments
Poisot, T. Thrall, P. H. Hochberg, M. E.
Morphological and Molecular Evolution Are Not Linked in Lamellodiscus (Plathyhelminthes, Monogenea)
Poisot, T. Verneau, O. Desdevises, Y.
Putative Speciation Events in Lamellodiscus (Monogenea: Diplectanidae) Assessed by a Morphometric Approach
Poisot, T. Desdevises, Y.
Resource Availability Affects the Structure of a Natural Bacteria--Bacteriophage Community
Poisot, T. Lepennetier, G. Martinez, E. Ramsayer, J. Hochberg, M. E.
Putative Effects of Recreational Fishing of Paracentrotus Lividus on Populations of Sea Urchins in Mediterranean Shallow Water
Tessier, A. Poisot, T. Romans, P. Desdevises, Y.
Interactions Between Immunocompetence, Somatic Condition and Parasitism in the Chub Leuciscus Cephalus in Early Spring
Poisot, T. Simková, A. Hyřsl, P. Morand, S.