This page is a list of our publications. The name of the journal has been omitted. If you want to get a sense of whether our research is sound, read it. Some of the entries on this page are un-reviewed preprints; if it appears here, we stand behind it.
Remember that when publishers turn the labor of researchers into profit, or re-direct public research funding to their shareholders through mandatory open access, they bring great value to humankind. If you are tempted to use a website like sci-hub to get access to our research for free (instead of paying a publisher for it), ask yourself: what would Aaron Swartz do?
Save Lives in the Next Pandemic: Ensure Vaccine Equity Now
Biodiversity Monitoring for a Just Planetary Future
The Coevolutionary Mosaic of Bat Betacoronavirus Emergence Risk
Deciphering Probabilistic Species Interaction Networks
Multilayer Biological Networks to Upscale Marine Research to Global Change-Smart Management and Sustainable Resource Use
A Minimum Data Standard for Wildlife Disease Studies
The Influence of Scale-Dependent Geodiversity on Species Distribution Models in a Biodiversity Hotspot
Introduction to Environmental Data ScienceIntroduction to Environmental Data Science. Jerry D.davis. Boca Raton, FL: Chapman & Hall/CRC Press, 2023, Xx+382 Pp., $100.00(H), ISBN: 978-1-032-32218-6
Postdoctoral Scientists Are Mentors, and It Is Time to Recognize Their Work
Gradient Boosted Trees Can Deliver More Than Accurate Ecological Predictions
The Missing Link: Discerning True From False Negatives When Sampling Species Interaction Networks
A Social–ecological Geography of Southern Canadian Lakes
What Constrains Food Webs? a Maximum Entropy Framework for Predicting Their Structure With Minimal Biases
Spatially Explicit Predictions of Food Web Structure From Regional Level Data
The Future of Ecological Research Will Not Be (Fully) Automated
A Global Biodiversity Observing System to Unite Monitoring and Guide Action
Network Embedding Unveils the Hidden Interactions in the Mammalian Virome
Guidelines for the Prediction of Species Interactions Through Binary Classification
Plant Resistance to Pathogens: Just You Wait?
SpatialBoundaries.jl: Edge Detection Using Spatial Wombling
Shortcomings of Reusing Species Interaction Networks Created by Different Sets of Researchers
Species Distribution Models: The Delicate Balance Between Signal and Noise
Graph Embedding and Transfer Learning Can Help Predict Potential Species Interaction Networks Despite Data Limitations
A Conceptual Framework to Integrate Biodiversity, Ecosystem Function, and Ecosystem Service Models
Ten Simple Rules for Teaching Yourself R
Optimising Predictive Models to Prioritise Viral Discovery in Zoonotic Reservoirs
Dissimilarity of Species Interaction Networks: Quantifying the Effect of Turnover and Rewiring
Evaluating Ecological Uniqueness Over Broad Spatial Extents Using Species Distribution Modelling
The Global Virome in One Network (VIRION): An Atlas of Vertebrate-Virus Associations
Increasing the Uptake of Ecological Model Results in Policy Decisions to Improve Biodiversity Outcomes
Food Web Reconstruction Through Phylogenetic Transfer of Low‐rank Network Representation
Refocusing Multiple Stressor Research Around the Targets and Scales of Ecological Impacts
A Roadmap Towards Predicting Species Interaction Networks (Across Space and Time)
SimpleSDMLayers.jl and GBIF.jl: A Framework for Species Distribution Modeling in Julia
[Re] the Evolution of Virulence in Pathogens With Vertical and Horizontal Transmission
NCBITaxonomy.jl - Rapid Biological Names Finding and Reconciliation
Data Proliferation, Reconciliation, and Synthesis in Viral Ecology
Global Knowledge Gaps in Species Interaction Networks Data
Beta and Phylogenetic Diversities Tell Complementary Stories About Ecological Networks Biogeography
Computers Can Help Us Find Raccoons and Other Living Creatures
SVD Entropy Reveals the High Complexity of Ecological Networks
Mangal.jl and EcologicalNetworks.jl: Two Complementary Packages for Analyzing Ecological Networks in Julia
Environment-Host-Microbial Interactions Shape the Sarracenia Purpurea Microbiome at the Continental Scale
Optimal Transportation Theory for Species Interaction Networks
The Science of the Host-Virus Network
Sampling and Asymptotic Network Properties of Spatial Multi‐trophic Networks
Omnidirectional and Omnifunctional Connectivity Analyses With a Diverse Species Pool
Key Questions for Next-Generation Biomonitoring
[Re] Chaos in a Three-Species Food Chain
Meta-Modeling Large-Scale Spatial Data Using Convolutional Neural Networks
Revisiting the Links-Species Scaling Relationship in Food Webs
Food Web Structure Alters Ecological Communities Top-Heaviness With Little Effect on the Biodiversity-Functioning Relationship
The Theory of Ecological Specialization
COVID-19 Models Demand an Abundance of Caution
Testing Predictability of Disease Outbreaks With a Simple Model of Pathogen Biogeography
EcologicalNetworks.jl: Analysing Ecological Networks of Species Interactions
Analysing Ecological Networks of Species Interactions
Open Science Isn’t Always Open to All Scientists
Complex Ecological Networks
[Re] Insect Natural Enemies as Regulating Factors
Artificial Intelligence for Ecological and Evolutionary Synthesis
Functional Diversity: An Epistemic Roadmap
Ecogeographical Rules and the Macroecology of Food Webs
Revealing Biases in the Sampling of Ecological Interaction Networks
The Marine Fish Food Web Is Globally Connected
Data-Based, Synthesis-Driven: Setting the Agenda for Computational Ecology
Ecological Data Should Not Be So Hard to Find and Reuse
Bringing Elton and Grinnell Together: A Quantitative Framework to Represent the Biogeography of Ecological Interaction Networks
Inferring Predator–prey Interactions in Food Webs
Interactions Retain the Co-Phylogenetic Matching That Communities Lost
[Re] on the Coexistence of Specialists and Generalists
Compositional Turnover in Host and Parasite Communities Does Not Change Network Structure
Identifying a Common Backbone of Interactions Underlying Food Webs From Different Ecosystems
Management, Archiving, and Sharing for Biologists and the Role of Research Institutions in the Technology-Oriented Age
Homogenization of Species Composition and Species Association Networks Are Decoupled
Making Scientific Content More Accessible
Using Peer Review to Support Development of Community Resources for Research Data Management
Ecological Interactions and the Netflix Problem
Paco: Implementing Procrustean Approach to Cophylogeny in R
Hosts, Parasites and Their Interactions Respond to Different Climatic Variables
Simulations of Biomass Dynamics in Community Food Webs
Network Structure and Local Adaptation in Co-Evolving Bacteria-Phage Interactions
Linear Filtering Reveals False Negatives in Species Interaction Data
Wind Drives Microbial Eukaryote Communities in a Temperate Closed Lagoon
Sustainable Computational Science: The ReScience Initiative
Evolutionary Ecology of Specialisation
BiMat: A MATLAB Package to Facilitate the Analysis of Bipartite Networks
Temperature and Trophic Structure Are Driving Microbial Productivity Along a Biogeographical Gradient
Ten Simple Rules for Digital Data Storage
How Ecological Networks Evolve
Mangal – Making Ecological Network Analysis Simple
Synthetic Datasets and Community Tools for the Rapid Testing of Ecological Hypotheses
The Structure of Probabilistic Networks
Describe, Understand and Predict: Why Do We Need Networks in Ecology?
When Is Co-Phylogeny Evidence of Coevolution?
Best Publishing Practices to Improve User Confidence in Scientific Software
The Next Generation Ofaction Ecology: Novel Approaches Towards Global Ecological Research
Bacteriophage Richness Reduces Bacterial Niche Overlap in Experimental Microcosms
A Continuum of Specialists and Generalists in Empirical Communities
Connecting People and Ideas From Around the World: Global Innovation Platforms for Next‐generation Ecology and Beyond
The Spread of a Novel Behavior in Wild Chimpanzees: New Insights Into the Ape Cultural Mind
Beyond Species: Why Ecological Interaction Networks Vary Through Space and Time
When Is an Ecological Network Complex? Connectance Drives Degree Distribution and Emerging Network Properties
Dispersal and Spatial Heterogeneity Allow Coexistence Between Enemies and Protective Mutualists
Ongoing Worldwide Homogenization of Human Pathogens
Social Network Analysis Shows Direct Evidence for Social Transmission of Tool Use in Wild Chimpanzees
Using Neutral Theory to Reveal the Contribution of Meta-Community Processes to Assembly in Complex Landscapes
Lack of Quantitative Training Among Early-Career Ecologists: A Survey of the Problem and Potential Solutions
Inferring Food Web Structure From Predator–prey Body Size Relationships
Phage-Bacteria Infection Networks
Moving Toward a Sustainable Ecological Science: Don’t Let Data Go to Waste!
Facultative and Obligate Parasite Communities Exhibit Different Network Properties
Trophic Complementarity Drives the Biodiversity-Ecosystem Functioning Relationship in Food Webs
The Case for Open Preprints in Biology
An a Posteriori Measure of Network Modularity
Terminal Investment Induced by a Bacteriophage in a Rhizosphere Bacterium
High-Throughput Sequencing: A Roadmap Toward Community Ecology
The Structure of Natural Microbial Enemy-Victim Networks
Trophic Network Structure Emerges Through Antagonistic Coevolution in Temporally Varying Environments
A Comparative Study of Ecological Specialization Estimators
A Simple Model to Study Phylogeographies and Speciation Patterns in Space
The Dissimilarity of Species Interaction Networks
The Digitize Package: Extracting Numerical Data From Scatterplots
Morphological and Molecular Evolution Are Not Linked in Lamellodiscus (Plathyhelminthes, Monogenea)
A Conceptual Framework for the Evolution of Ecological Specialisation
A Global Network of Next Generation Ecologists
Resource Availability Affects the Structure of a Natural Bacteria-Bacteriophage Community
Putative Speciation Events in Lamellodiscus (Monogenea: Diplectanidae) Assessed by a Morphometric Approach
Effects of Recreational Fishing of Paracentrotus Lividus on Populations of Sea Urchins in Mediterranean
Interactions Between Immunocompetence, Somatic Condition and Parasitism in the Chub Leuciscus Cephalus in Early Spring