Papers
2021 A Roadmap Towards Predicting Species Interaction Networks (Across Space and Time)
Strydom, T. Catchen, M. D. Banville, F. Caron, D. Dansereau, G. Desjardins-Proulx, P. Forero-Muñoz, N. R. Higino, G. Mercier, B. Gonzalez, A. Gravel, D. Pollock, L. Poisot, T.
2021 SimpleSDMLayers.jl and GBIF.jl: A Framework for Species Distribution Modeling in Julia
Dansereau, G. Poisot, T.
2021 Environment–host–microbial Interactions Shape the Sarracenia Purpurea Microbiome at the Continental Scale
Freedman, Z. B. McGrew, A. Baiser, B. Besson, M. Gravel, D. Poisot, T. Record, S. Trotta, L. B. Gotelli, N. J.
2021 SVD Entropy Reveals the High Complexity of Ecological Networks
Strydom, T. Dalla Riva, G. V. Poisot, T.
2021 Optimizing Predictive Models to Prioritize Viral Discovery in Zoonotic Reservoirs
Becker, D. Albery, G. F. Sjodin, A. R. Poisot, T. Bergner, L. Dallas, T. Eskew, E. A. Farrell, M. J. Guth, S. Han, B. A. Simmons, N. B. Stock, M. Teeling, E. C. Carlson, C. J.
2021 The Global Virome in One Network (VIRION): An Atlas of Vertebrate-Virus Associations
Carlson, C. J. Gibb, R. J. Albery, G. F. Brierley, L. Connor, R. Dallas, T. Eskew, E. A. Fagre, A. C. Farrell, M. J. Frank, H. K. Muylaert, R. d. L. Poisot, T. Rasmussen, A. Ryan, S. J. Seifert, S.
2021 Data Proliferation, Reconciliation, and Synthesis in Viral Ecology
Gibb, R. Albery, G. F. Becker, D. J. Brierley, L. Connor, R. Dallas, T. A. Eskew, E. A. Farrell, M. J. Rasmussen, A. L. Ryan, S. J. Sweeny, A. Carlson, C. J. Poisot, T.
2021 Food Web Reconstruction Through Phylogenetic Transfer of Low-Rank Network Representation
Strydom, T. Bouskila, S. Banville, F. Barros, C. Caron, D. Farrell, M. J. Fortin, M.J. Hemming, V. Mercier, B. Pollock, L. Runghen, R. Riva, G. V. D. Poisot, T.
2021 Dissimilarity of Species Interaction Networks: Quantifying the Effect of Turnover and Rewiring
Poisot, T.
2021 Computers Can Help Us Find Raccoons and Other Living Creatures
Higino, G. T. Forero, N. Banville, F. Dansereau, G. Poisot, T.
2021 Mangal.jl and EcologicalNetworks.jl: Two Complementary Packages for Analyzing Ecological Networks in Julia
Banville, F. Vissault, S. Poisot, T.
2021 Evaluating Ecological Uniqueness Over Broad Spatial Extents Using Species Distribution Modelling
Dansereau, G. Legendre, P. Poisot, T.
2021 Imputing the Mammalian Virome With Linear Filtering and Singular Value Decomposition
Poisot, T. Ouellet, M.A. Mollentze, N. Farrell, M. J. Becker, D. J. Albery, G. F. Gibb, R. J. Seifert, S. N. Carlson, C. J.
2021 Global Knowledge Gaps in Species Interaction Networks Data
Poisot, T. Bergeron, G. Cazelles, K. Dallas, T. Gravel, D. MacDonald, A. Mercier, B. Violet, C. Vissault, S.
2021 Beta and Phylogenetic Diversities Tell Complementary Stories About Ecological Networks Biogeography
Higino, G. T. Poisot, T.
2021 Optimal Transportation Theory for Species Interaction Networks
Stock, M. Poisot, T. De Baets, B.
2020 Omnidirectional and Omnifunctional Connectivity Analyses With a Diverse Species Pool
Lecours-Tessier, D. Maranger, R. Poisot, T.
2020 Testing Predictability of Disease Outbreaks With a Simple Model of Pathogen Biogeography
Dallas, T. A. Carlson, C. J. Poisot, T.
2020 Novel Application of Convolutional Neural Networks for the Meta-Modeling of Large-Scale Spatial Data
Stern, K. Poisot, T.
2020 [Re] Chaos in a Three-Species Food Chain
Dansereau, G. Banville, F. Basque, E. MacDonald, A. Poisot, T.
2020 Revisiting the Links-Species Scaling Relationship in Food Webs
MacDonald, A. A. M. Banville, F. Poisot, T.
2020 Food Web Structure Alters Ecological Communities Top-Heaviness With Little Effect on the Biodiversity-Functioning Relationship.
Delmas, E. Stouffer, D. B. Poisot, T.
2019 Ecogeographical Rules and the Macroecology of Food Webs
Baiser, B. Gravel, D. Cirtwill, A. R. Dunne, J. A. Fahimipour, A. K. Gilarranz, L. J. Grochow, J. A. Li, D. Martinez, N. D. McGrew, A. Poisot, T. Romanuk, T. N. Stouffer, D. B. Trotta, L. B. Valdovinos, F. S. Williams, R. J. Wood, S. A. Yeakel, J. D.
2019 Artificial Intelligence for Ecological and Evolutionary Synthesis
Desjardins-Proulx, P. Poisot, T. Gravel, D.
2019 Key Questions for Next-Generation Biomonitoring
Makiola, A. Compson, Z. G. Baird, D. Barnes, M. A. Boerlijst, S. P. Bouchez, A. Brennan, G. Bush, A. Canard, E. Cordier, T. Creer, S. Curry, A. David, P. Dumbrell, A. Gravel, D. Hajibabaei, M. Hayden, B. Hoorn, B. Jarne, P. Jones, I. Karimi, B. Keck, F. Kelly, M. Knot, I. Krol, L. Massol, F. Monk, W. Murphy, K. Pawlowski, J. Poisot, T. Porter, T. Randall, K. Ransome, E. Ravigné, V. Raybould, A. Robin, S. Schrama, M. Schatz, B. Tamaddoni-Nezhad, A. Trimbos, K. B. Vacher, C. Vasselon, V. Wood, S. A. Woodward, G. Bohan, D. A.
2019 Functional Diversity: An Epistemic Roadmap
Malaterre, C. Dussault, A. C. Rousseau-Mermans, S. Barker, G. Beisner, B. E. Bouchard, F. Desjardins, E. Handa, I. T. Kembel, S. W. Lajoie, G. Maris, V. Munson, A. D. Odenbaugh, J. Poisot, T. Shapiro, B. J. Suttle, C. A.
2019 EcologicalNetworks.jl - Analysing Ecological Networks
Poisot, T. Belisle, Z. Hoebeke, L. Stock, M. Szefer, P.
2019 Revealing Biases in the Sampling of Ecological Interaction Networks
Aguiar, M. A. Newman, E. A. Pires, M. M. Yeakel, J. D. Boettiger, C. Burkle, L. A. Gravel, D. Guimarães, P. R. O’Donnell, J. L. Poisot, T. Fortin, M.J. Hembry, D. H.
2019 The Marine Fish Food Web Is Globally Connected
Albouy, C. Archambault, P. Appeltans, W. Araújo, M. B. Beauchesne, D. Cazelles, K. Cirtwill, A. R. Fortin, M.J. Galiana, N. Leroux, S. J. Pellissier, L. Poisot, T. Stouffer, D. B. Wood, S. A. Gravel, D.
2019 Data-Based, Synthesis-Driven: Setting the Agenda for Computational Ecology
Poisot, T. LaBrie, R. Larson, E. Rahlin, A. Simmons, B. I.
2019 Ecological Data Should Not Be So Hard to Find and Reuse
Poisot, T. Bruneau, A. Gonzalez, A. Gravel, D. Peres-Neto, P.
2019 [Re] Insect Natural Enemies as Regulating Factors
Caron, D. Lessard, V. Wu, Q. Poisot, T.
2018 Interactions Retain the Co-Phylogenetic Matching That Communities Lost
Poisot, T. Stouffer, D. B.
2018 Complex Ecological Networks
Besson, M. Delmas, E. Poisot, T. Gravel, D.
2018 Homogenization of Species Composition and Species Association Networks Are Decoupled
Li, D. Poisot, T. Waller, D. M. Baiser, B.
2018 Inferring Predator-Prey Interactions in Food Webs
Pomeranz, J. P. Thompson, R. M. Poisot, T. Harding, J. S.
2018 Bringing Elton and Grinnell Together: A Quantitative Framework to Represent the Biogeography of Ecological Interaction Networks
Gravel, D. Baiser, B. Dunne, J. A. Kopelke, J.P. Martinez, N. D. Nyman, T. Poisot, T. Stouffer, D. B. Tylianakis, J. M. Wood, S. A. Roslin, T.
2018 [Re] on the Coexistence of Specialists and Generalists
Poisot, T.
2018 Identifying a Common Backbone of Interactions Underlying Food Webs From Different Ecosystems
Mora, B. B. Gravel, D. Gilarranz, L. J. Poisot, T. Stouffer, D. B.
2018 Analysing Ecological Networks of Species Interactions
Delmas, E. Besson, M. Brice, M.H. Burkle, L. A. Dalla Riva, G. V. Fortin, M.J. Gravel, D. Guimarães, P. R. Hembry, D. H. Newman, E. A. Olesen, J. M. Pires, M. M. Yeakel, J. D. Poisot, T.
2018 Management, Archiving, and Sharing for Biologists and the Role of Research Institutions in the Technology-Oriented Age
Renaut, S. Budden, A. E. Gravel, D. Poisot, T. Peres-Neto, P.
2017 Network Structure and Local Adaptation in Coevolving Bacteria-Phage Interactions
Gurney, J. Aldakak, L. Betts, A. Gougat-Barbera, C. Poisot, T. Kaltz, O. Hochberg, M. E.
2017 Ecological Interactions and the Netflix Problem
Desjardins-Proulx, P. Laigle, I. Poisot, T. Gravel, D.
2017 Making Scientific Content More Accessible
Goring, S. Whitney, K. S. Bruna, E. M. Jacob, A. L. Poisot, T.
2017 Wind Drives Microbial Eukaryote Communities in a Temperate Closed Lagoon
Péquin, B. Mohit, V. Poisot, T. Tremblay, R. Lovejoy, C.
2017 Hosts, Parasites and Their Interactions Respond to Different Climatic Variables
Poisot, T. Gueveneux-Julien, C. Fortin, M.J. Gravel, D. Legendre, P.
2017 Using Peer Review to Support Development of Community Resources for Research Data Management
Soyka, H. Budden, A. Hutchison, V. Bloom, D. Duckles, J. Hodge, A. Mayernik, M. Poisot, T. Rauch, S. Steinhart, G. Wasser, L. Whitmire, A. Wright, S.
2017 Paco: Implementing Procrustean Approach to Cophylogeny in R
Hutchinson, M. C. Cagua, E. F. Balbuena, J. A. Stouffer, D. B. Poisot, T.
2017 Simulations of Biomass Dynamics in Community Food Webs
Delmas, E. Brose, U. Gravel, D. Stouffer, D. B. Poisot, T.
2017 Linear Filtering Reveals False Negatives in Species Interaction Data
Stock, M. Poisot, T. Waegeman, W. Baets, B. D.
2017 Compositional Turnover in Host and Parasite Communities Does Not Change Network Structure
Dallas, T. Poisot, T.
2017 Sustainable Computational Science: The ReScience Initiative
Rougier, N. P. Hinsen, K. Alexandre, F. Arildsen, T. Barba, L. A. Benureau, F. C. Y. Brown, C. T. Buyl, P. Caglayan, O. Davison, A. P. Delsuc, M.A. Detorakis, G. Diem, A. K. Drix, D. Enel, P. Girard, B. Guest, O. Hall, M. G. Henriques, R. N. Hinaut, X. Jaron, K. S. Khamassi, M. Klein, A. Manninen, T. Marchesi, P. McGlinn, D. Metzner, C. Petchey, O. Plesser, H. E. Poisot, T. Ram, K. Ram, Y. Roesch, E. Rossant, C. Rostami, V. Shifman, A. Stachelek, J. Stimberg, M. Stollmeier, F. Vaggi, F. Viejo, G. Vitay, J. Vostinar, A. E. Yurchak, R. Zito, T.
2016 BiMAT: A MATLAB Package to Facilitate the Analysis and Visualization of Bipartite Networks
Flores, C. O. Poisot, T. Valverde, S. Weitz, J. S.
2016 How Ecological Networks Evolve
Poisot, T. Stouffer, D.
2016 Ten Simple Rules for Digital Data Storage
Hart, E. M. Barmby, P. LeBauer, D. Michonneau, F. Mount, S. Mulrooney, P. Poisot, T. Woo, K. H. Zimmerman, N. B. Hollister, J. W.
2016 Mangal - Making Ecological Network Analysis Simple
Poisot, T. Baiser, B. Dunne, J. A. Kéfi, S. Massol, F. Mouquet, N. Romanuk, T. N. Stouffer, D. B. Wood, S. A. Gravel, D.
2016 Synthetic Datasets and Community Tools for the Rapid Testing of Ecological Hypotheses
Poisot, T. Gravel, D. Leroux, S. Wood, S. A. Fortin, M.J. Baiser, B. Cirtwill, A. R. Araújo, M. B. Stouffer, D. B.
2016 The Structure of Probabilistic Networks
Poisot, T. Cirtwill, A. R. Cazelles, K. Gravel, D. Fortin, M.J. Stouffer, D. B.
2016 Describe, Understand and Predict: Why Do We Need Networks in Ecology?
Poisot, T. Stouffer, D. B. Kéfi, S.
2015 Temperature and Trophic Structure Are Driving Microbial Productivity Along a Biogeographical Gradient
Gray, S. M. Poisot, T. Harvey, E. Mouquet, N. Miller, T. E. Gravel, D.
2015 The Spread of a Novel Behavior in Wild Chimpanzees: New Insights Into the Ape Cultural Mind
Gruber, T. Poisot, T. Zuberbühler, K. Hoppitt, W. Hobaiter, C.
2015 Connecting People and Ideas From Around the World: Global Innovation Platforms for Next-Generation Ecology and Beyond
Jørgensen, P. S. Barraquand, F. Bonhomme, V. Curran, T. J. Cieraad, E. Ezard, T. G. Gherardi, L. A. Hayes, R. A. Poisot, T. Salguero-Gómez, R. , .
2015 Bacteriophage Richness Reduces Bacterial Niche Overlap in Experimental Microcosms
Matias, M. G. Gravel, D. Combe, M. Poisot, T. Barbera, C. Lounnas, M. Bouvier, T. Mouquet, N.
2015 A Continuum of Specialists and Generalists in Empirical Communities
Poisot, T. Kéfi, S. Morand, S. Stanko, M. Marquet, P. A. Hochberg, M. E.
2015 Beyond Species: Why Ecological Interaction Networks Vary Through Space and Time
Poisot, T. Stouffer, D. B. Gravel, D.
2015 When Is Co-Phylogeny Evidence of Coevolution?
Poisot, T.
2015 Evolutionary Ecology of Specialisation
Vamosi, J. C. Poisot, T.
2015 The Next Generation of Action Ecology: Novel Approaches Towards Global Ecological Research
White, R. L. Sutton, A. E. Salguero-Gómez, R. Bray, T. C. Campbell, H. Cieraad, E. Geekiyanage, N. Gherardi, L. Hughes, A. C. Jørgensen, P. S. Poisot, T. DeSoto, L. Zimmerman, N.
2015 Best Publishing Practices to Improve User Confidence in Scientific Software
Poisot, T.
2014 When Is an Ecological Network Complex? Connectance Drives Degree Distribution and Emerging Network Properties
Poisot, T. Gravel, D.
2014 Lack of Quantitative Training Among Early-Career Ecologists: A Survey of the Problem and Potential Solutions
Barraquand, F. Ezard, T. H. G. Jørgensen, P. S. Zimmerman, N. Chamberlain, S. Salguero-Gómez, R. Curran, T. J. Poisot, T.
2014 Using Neutral Theory to Reveal the Contribution of Meta-Community Processes to Assembly in Complex Landscapes
Gravel, D. Poisot, T. Desjardins-Proulx, P.
2014 Ongoing Worldwide Homogenization of Human Pathogens
Poisot, T. Nunn, C. Morand, S.
2014 Dispersal and Spatial Heterogeneity Allow Coexistence Between Enemies and Protective Mutualists
Poisot, T. Bever, J. D. Thrall, P. H. Hochberg, M. E.
2014 Social Network Analysis Shows Direct Evidence for Social Transmission of Tool Use in Wild Chimpanzees
Hobaiter, C. Poisot, T. Zuberbühler, K. Hoppitt, W. Gruber, T.
2013 Inferring Food Web Structure From Predator-Prey Body Size Relationships
Gravel, D. Poisot, T. Albouy, C. Velez, L. Mouillot, D.
2013 The Case for Open Preprints in Biology
Desjardins-Proulx, P. White, E. P. Adamson, J. J. Ram, K. Poisot, T. Gravel, D.
2013 Moving Toward a Sustainable Ecological Science: Don't Let Data Go to Waste!
Poisot, T. Mounce, R. Gravel, D.
2013 The Structure of Natural Microbial Enemy-Victim Networks
Poisot, T. Lounnas, M. Hochberg, M. E.
2013 Trophic Complementarity Drives the Biodiversity-Ecosystem Functioning Relationship in Food Webs
Poisot, T. Mouquet, N. Gravel, D.
2013 Phage–bacteria Infection Networks
Weitz, J. S. Poisot, T. Meyer, J. R. Flores, C. O. Valverde, S. Sullivan, M. B. Hochberg, M. E.
2013 Facultative and Obligate Parasite Communities Exhibit Different Network Properties
Poisot, T. Stanko, M. Miklisová, D. Morand, S.
2013 High-Throughput Sequencing: A Roadmap Toward Community Ecology
Poisot, T. Péquin, B. Gravel, D.
2013 An a Posteriori Measure of Network Modularity
Poisot, T.
2012 A Simple Model to Study Phylogeographies and Speciation Patterns in Space
Desjardins-Proulx, P. Rosindell, J. L. Poisot, T. Gravel, D.
2012 A Comparative Study of Ecological Specialization Estimators
Poisot, T. Canard, E. Mouquet, N. Hochberg, M. E.
2012 The Dissimilarity of Species Interaction Networks
Poisot, T. Canard, E. Mouillot, D. Mouquet, N. Gravel, D.
2012 Terminal Investment Induced by a Bacteriophage in a Rhizosphere Bacterium
Poisot, T. Bell, T. Martinez, E. Gougat-Barbera, C. Hochberg, M. E.
2011 A Global Network of Next Generation Ecologists
Jorgensen, P. S. Bonhomme, V. Ezard, T. H. Hayes, R. A. Poisot, T. Salguero-Gomez, R. Vizzini, S. Zimmerman, N.
2011 A Conceptual Framework for the Evolution of Ecological Specialisation
Poisot, T. Bever, J. D. Nemri, A. Thrall, P. H. Hochberg, M. E.
2011 The Digitize Package: Extracting Numerical Data From Scatterplots
Poisot, T.
2011 Morphological and Molecular Evolution Are Not Linked in Lamellodiscus (Plathyhelminthes, Monogenea)
Poisot, T. Verneau, O. Desdevises, Y.
2011 Trophic Network Structure Emerges Through Antagonistic Coevolution in Temporally Varying Environments
Poisot, T. Thrall, P. H. Hochberg, M. E.
2010 Putative Speciation Events in Lamellodiscus (Monogenea: Diplectanidae) Assessed by a Morphometric Approach
Poisot, T. Desdevises, Y.
2010 Resource Availability Affects the Structure of a Natural Bacteria--Bacteriophage Community
Poisot, T. Lepennetier, G. Martinez, E. Ramsayer, J. Hochberg, M. E.
2010 Putative Effects of Recreational Fishing of Paracentrotus Lividus on Populations of Sea Urchins in Mediterranean Shallow Water
Tessier, A. Poisot, T. Romans, P. Desdevises, Y.
2009 Interactions Between Immunocompetence, Somatic Condition and Parasitism in the Chub Leuciscus Cephalus in Early Spring
Poisot, T. Simková, A. Hyřsl, P. Morand, S.