Biodiversity monitoring and biosurveillance

Where do we look? With what tools? We build software, simulations, and theories, to understand where we can monitor environmental processes, with a specific focus on biodiversity and disease.

Conformal Prediction Quantifies the Uncertainty of Species Distribution Models
2024 Google Scholar
T. Poisot
Meta-Modeling Large-Scale Spatial Data Using Convolutional Neural Networks
2020 Google Scholar
K. Stern T. Poisot
A Global Biodiversity Observing System to Unite Monitoring and Guide Action
2023 Text (via DOI)
A. Gonzalez P. Vihervaara P. Balvanera A.E. Bates E. Bayraktarov P.J. Bellingham A. Bruder J. Campbell M.D. Catchen J. Cavender-Bares J. Chase N. Coops M.J. Costello M. Dornelas G. Dubois E.J. Duffy H. Eggermont N. Fernandez S. Ferrier G.N. Geller M. Gill D. Gravel C.A. Guerra R. Guralnick M. Harfoot T. Hirsch S. Hoban A.C. Hughes M.E. Hunter F. Isbell W. Jetz N. Juergens W.D. Kissling C.B. Krug Y. Le Bras B. Leung M.C. Londoño-Murcia J.M. Lord M. Loreau A. Luers K. Ma A.J. MacDonald M. McGeoch K.L. Millette Z. Molnar A.S. Mori F.E. Muller-Karger H. Muraoka L. Navarro T. Newbold A. Niamir D. Obura M. O’Connor M. Paganini H. Pereira T. Poisot L.J. Pollock A. Purvis A. Radulovici D. Rocchini M. Schaepman G. Schaepman-Strub D.S. Schmeller U. Schmiedel F.D. Schneider M.M. Shakya A. Skidmore A.L. Skowno Y. Takeuchi M.N. Tuanmu E. Turak W. Turner M.C. Urban N. Urbina-Cardona R. Valbuena B. Havre E. Wright
SimpleSDMLayers.jl and GBIF.jl: A Framework for Species Distribution Modeling in Julia
2021 Text (via DOI)
G. Dansereau T. Poisot
Refocusing Multiple Stressor Research Around the Targets and Scales of Ecological Impacts
2021 Text (via DOI)
B.I. Simmons P.S.A. Blyth J.L. Blanchard T. Clegg E. Delmas A. Garnier C.A. Griffiths U. Jacob F. Pennekamp O.L. Petchey T. Poisot T.J. Webb A.P. Beckerman
Key Questions for Next-Generation Biomonitoring
2020 Text (via DOI)
A. Makiola Z.G. Compson D.J. Baird M.A. Barnes S.P. Boerlijst A. Bouchez G. Brennan A. Bush E. Canard T. Cordier S. Creer R.A. Curry P. David A.J. Dumbrell D. Gravel M. Hajibabaei B. Hayden B. Hoorn P. Jarne J.I. Jones B. Karimi F. Keck M. Kelly I.E. Knot L. Krol F. Massol W.A. Monk J. Murphy J. Pawlowski T. Poisot T.M. Porter K.C. Randall E. Ransome V. Ravigné A. Raybould S. Robin M. Schrama B. Schatz A. Tamaddoni-Nezhad K.B. Trimbos C. Vacher V. Vasselon S. Wood G. Woodward D.A. Bohan
Testing Predictability of Disease Outbreaks With a Simple Model of Pathogen Biogeography
2019 Text (via DOI)
T.A. Dallas C.J. Carlson T. Poisot
Omnidirectional and Omnifunctional Connectivity Analyses With a Diverse Species Pool
2020 Text (via DOI)
D.L. Tessier R. Maranger T. Poisot
Computers Can Help Us Find Raccoons and Other Living Creatures
2021 Text (via DOI)
G.T. Higino N. Forero F. Banville G. Dansereau T. Poisot
Evaluating Ecological Uniqueness Over Broad Spatial Extents Using Species Distribution Modelling
2022 Text (via DOI)
G. Dansereau P. Legendre T. Poisot
Optimising Predictive Models to Prioritise Viral Discovery in Zoonotic Reservoirs
2022 Text (via DOI)
D.J. Becker G.F. Albery A.R. Sjodin T. Poisot L.M. Bergner B. Chen L.E. Cohen T.A. Dallas E.A. Eskew A.C. Fagre M.J. Farrell S. Guth B.A. Han N.B. Simmons M. Stock E.C. Teeling C.J. Carlson
SpatialBoundaries.jl: Edge Detection Using Spatial Wombling
2023 Text (via DOI)
T. Strydom T. Poisot
Multilayer Biological Networks to Upscale Marine Research to Global Change-Smart Management and Sustainable Resource Use
2024 Text (via DOI)
D. Madeira C. Madeira P. Calosi F. Vermandele C. Carrier-Belleau A. Barria-Araya R. Daigle H.S. Findlay T. Poisot
BON in a Box: An Open and Collaborative Platform for Biodiversity Monitoring, Indicator Calculation, and Reporting
2024 Text (via DOI)
J. Griffith J.M. Lord M.D. Catchen M.I. Arce-Plata M.F.G. Bohorquez M. Chandramohan M.C. Diaz-Corzo D. Gravel L.F.U. Gonzalez C. Gutiérrez I. Helfenstein S. Hoban J.M. Kass G. Laroque L. Laikre D. Leigh B. Leung A. Mastretta-Yanes K. Millette D. Moreno M.A. Molina-Berbeo K. Norman V.J. Rincón-Parra S. Pahls P.R. Peres-Neto K. Perreira T. Poisot L.J. Pollock M.H.O. Rodríguez C. Röösli F. Rousseu L.M. Sánchez-Clavijo M.C. Schuman O. Selmoni J. Silva T. Surasinghe E. Turak E.S. Valencia S. Valentin N. Wightman J. Zuloaga M.C.L. Murcia A. Gonzalez